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Difference between Have an in with someone and Have it in for someone

have an in with someone(coll.) have influence with smb. of authority:

  • He had an in with the city government, but that doesn’t mean they knew everything he did.

Note: The expression does not correlate in meaning with the phrase have a run-in with someone—(coll.) have a troublesome encounter or a row with a person:

  • Your father and I have many run-ins these days. He can’t get it into his thick skull that I have come of age.

have it in for someoneshow ill will towards smb.; intend to do harm to a person:

  • I just don’t want to lose my funding because she has it in for me badmouthing me to everyone in the department.

See also: be in with someone / be with someone.